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Database Added 23 May 2026

MySQL server has gone away (error 2006)

The client lost its connection to MySQL, often because an idle pooled connection timed out, max_allowed_packet was too small, or the server restarted.

Quick fix

Read the commands before running them. Anything that restarts a service, deletes data or changes permissions should be tried on a non-production system first.

Quick fix
SHOW VARIABLES LIKE 'wait_timeout';
SHOW VARIABLES LIKE 'max_allowed_packet';
SET GLOBAL wait_timeout = 86400;
SET GLOBAL max_allowed_packet = 67108864;
# Application side: ping/reconnect before reuse
# PyMySQL example
connection.ping(reconnect=True)

How to diagnose Database errors

Database errors group into connection exhaustion, lock contention and deadlocks, constraint violations, and resource limits. Connection errors under load are the most misdiagnosed: "too many connections" is almost never fixed by raising max_connections, because each connection costs memory. It is fixed by putting a pooler in front and finding the code path that leaks connections.

If the quick fix above does not resolve it, work through these steps. They apply to this whole class of error, not just to this one message, which is usually what saves the time.

  1. Look at what the server currently sees: SELECT * FROM pg_stat_activity in PostgreSQL, SHOW FULL PROCESSLIST in MySQL. Sessions sitting in idle in transaction are the usual culprit behind connection exhaustion.
  2. For deadlocks, read the deadlock report the database logs. It names both transactions and the exact lock order. The fix is nearly always to make all code paths acquire locks in the same order.
  3. Check whether the error is from the database or from a pooler. PgBouncer, ProxySQL and RDS Proxy return their own errors that look database-native but need pooler-side fixes.
  4. Run EXPLAIN (ANALYZE, BUFFERS) on slow queries. Lock-wait timeouts are often just very slow queries holding locks longer than they should.
  5. Verify you are connected to the writer, not a read replica. READONLY and "cannot execute in a read-only transaction" errors mean traffic is reaching the wrong endpoint.

Tools worth reaching for

  • pg_stat_activity
  • SHOW ENGINE INNODB STATUS
  • EXPLAIN ANALYZE
  • slow query log
  • pgbadger

Authoritative references

Primary documentation for this error, worth reading before applying any fix in production.

dev.mysql.com

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